Make GMT color palette tables from a grid file.
This is a module that will help you make static color palette tables (CPTs). By default, the CPT will simply be saved to the current session, but you can use
outputto save it to a file. The CPT is based on an existing dynamic master CPT of your choice, and the mapping from data value to colors is through the data’s cumulative distribution function (CDF), so that the colors are histogram equalized. Thus if the grid(s) and the resulting CPT are used in
pygmt.Figure.grdimagewith a linear projection, the colors will be uniformly distributed in area on the plot. Let z be the data values in the grid. Define CDF(Z) = (# of z < Z) / (# of z in grid). (NaNs are ignored). These z-values are then normalized to the master CPT and colors are sampled at the desired intervals.
The CPT includes three additional colors beyond the range of z-values. These are the background color (B) assigned to values lower than the lowest z-value, the foreground color (F) assigned to values higher than the highest z-value, and the NaN color (N) painted wherever values are undefined. For color tables beyond the standard GMT offerings, visit cpt-city and Scientific Colour-Maps.
If the master CPT includes B, F, and N entries, these will be copied into the new master file. If not, the parameters COLOR_BACKGROUND, COLOR_FOREGROUND, and COLOR_NAN from the gmt.conf file or the command line will be used. This default behavior can be overruled using the options
The color model (RGB, HSV or CMYK) of the palette created by
pygmt.grd2cptwill be the same as specified in the header of the master CPT. When there is no COLOR_MODEL entry in the master CPT, the COLOR_MODEL specified in the gmt.conf file or the
color_modeloption will be used.
Full option list at https://docs.generic-mapping-tools.org/latest/grd2cpt.html
A = transparency
C = cmap
D = background
E = nlevels
F = color_model
G = truncate
H = output
I = reverse
L = limit
M = overrule_bg
N = no_bg
Q = log
R = region
T = series
V = verbose
W = categorical
Ww = cyclic
Z = continuous
grid (str or xarray.DataArray) – The file name of the input grid or the grid loaded as a DataArray.
transparency (int or float or str) – Sets a constant level of transparency (0-100) for all color slices. Append +a to also affect the fore-, back-, and nan-colors [Default is no transparency, i.e., 0 (opaque)].
cmap (str) – Selects the master color palette table (CPT) to use in the interpolation. Full list of built-in color palette tables can be found at https://docs.generic-mapping-tools.org/latest/cookbook/cpts.html#built-in-color-palette-tables-cpt.
background (bool or str) – Select the back- and foreground colors to match the colors for lowest and highest z-values in the output CPT [Default (
background='o') uses the colors specified in the master file, or those defined by the parameters COLOR_BACKGROUND, COLOR_FOREGROUND, and COLOR_NAN]. Use
background='i'to match the colors for the lowest and highest values in the input (instead of the output) CPT.
color_model – [R|r|h|c][+c[label]]. Force output CPT to be written with r/g/b codes, gray-scale values or color name (R, default) or r/g/b codes only (r), or h-s-v codes (h), or c/m/y/k codes (c). Optionally or alternatively, append +c to write discrete palettes in categorical format. If label is appended then we create labels for each category to be used when the CPT is plotted. The label may be a comma-separated list of category names (you can skip a category by not giving a name), or give start[-], where we automatically build monotonically increasing labels from start (a single letter or an integer). Append
-to build ranges start-start+1 instead.
nlevels (bool or int or str) – Set to
Trueto create a linear color table by using the grid z-range as the new limits in the CPT. Alternatively, set nlevels to resample the color table into nlevels equidistant slices.
series (list or str) – [min/max/inc[+b|l|n]|file|list]. Defines the range of the new CPT by giving the lowest and highest z-value (and optionally an interval). If this is not given, the existing range in the master CPT will be used intact. The values produced defines the color slice boundaries. If +n is used it refers to the number of such boundaries and not the number of slices. For details on array creation, see https://docs.generic-mapping-tools.org/latest/makecpt.html#generate-1d-array.
truncate (list or str) – zlo/zhi. Truncate the incoming CPT so that the lowest and highest z-levels are to zlo and zhi. If one of these equal NaN then we leave that end of the CPT alone. The truncation takes place before any resampling. See also https://docs.generic-mapping-tools.org/latest/cookbook/features.html#manipulating-cpts.
output (str) – Optional parameter to set the file name with extension .cpt to store the generated CPT file. If not given or False (default), saves the CPT as the session current CPT.
reverse (str) – Set this to True or c [Default] to reverse the sense of color progression in the master CPT. Set this to z to reverse the sign of z-values in the color table. Note that this change of z-direction happens before truncate and series values are used so the latter must be compatible with the changed z-range. See also https://docs.generic-mapping-tools.org/latest/cookbook/features.html#manipulating-cpts.
overrule_bg (str) – Overrule background, foreground, and NaN colors specified in the master CPT with the values of the parameters COLOR_BACKGROUND, COLOR_FOREGROUND, and COLOR_NAN specified in the gmt.conf file or on the command line. When combined with
background, only COLOR_NAN is considered.
no_bg (bool) – Do not write out the background, foreground, and NaN-color fields [Default will write them, i.e.
log (bool) – For logarithmic interpolation scheme with input given as logarithms. Expects input z-values provided via
seriesto be log10(z), assigns colors, and writes out z.
continuous (bool) – Force a continuous CPT when building from a list of colors and a list of z-values [Default is None, i.e. discrete values].
categorical (bool) – Do not interpolate the input color table but pick the output colors starting at the beginning of the color table, until colors for all intervals are assigned. This is particularly useful in combination with a categorical color table, like
cyclic (bool) – Produce a wrapped (cyclic) color table that endlessly repeats its range. Note that
cyclic=Truecannot be set together with
Select verbosity level [Default is w], which modulates the messages written to stderr. Choose among 7 levels of verbosity:
q - Quiet, not even fatal error messages are produced
e - Error messages only
w - Warnings [Default]
t - Timings (report runtimes for time-intensive algorithms);
i - Informational messages (same as
c - Compatibility warnings
d - Debugging messages